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badElementIndex(int, int, String) - Static method in class edu.claflin.finder.algo.jungutils.Preconditions

badPositionIndex(int, int, String) - Static method in class edu.claflin.finder.algo.jungutils.Preconditions

badPositionIndexes(int, int, int) - Static method in class edu.claflin.finder.algo.jungutils.Preconditions

BatchProcessor<T,S> - Class in edu.claflin.finder.logic.processor

Used to process one or multiple objects.

BatchProcessor() - Constructor for class edu.claflin.finder.logic.processor.BatchProcessor

Constructs a BatchProcessor.

BetweennessCentrality<V,E> - Class in edu.claflin.finder.algo.jungutils

Computes betweenness centrality for each vertex and edge in the graph.

BetweennessCentrality(Graph<V, E>) - Constructor for class edu.claflin.finder.algo.jungutils.BetweennessCentrality

Calculates betweenness scores based on the all-pairs unweighted shortest paths in the graph.

BetweennessCentrality(Graph<V, E>, Function<? super E, ? extends Number>) - Constructor for class edu.claflin.finder.algo.jungutils.BetweennessCentrality

Calculates betweenness scores based on the all-pairs weighted shortest paths in the graph.

BetweennessCentrality.BetweennessComparator - Class in edu.claflin.finder.algo.jungutils

BetweennessCentrality.BetweennessData - Class in edu.claflin.finder.algo.jungutils

BetweennessComparator() - Constructor for class edu.claflin.finder.algo.jungutils.BetweennessCentrality.BetweennessComparator

BetweennessData() - Constructor for class edu.claflin.finder.algo.jungutils.BetweennessCentrality.BetweennessData

BFS(Map) - Method in class edu.claflin.finder.logic.cygrouper.CytogrouperMain

BinarySearchTree<T extends TreeNodeInfo> - Class in edu.claflin.finder.logic.communities.struct

BinarySearchTree() - Constructor for class edu.claflin.finder.logic.communities.struct.BinarySearchTree

Create an empty BinarySearchTree.

BinarySearchTree(boolean) - Constructor for class edu.claflin.finder.logic.communities.struct.BinarySearchTree

bipartite - Variable in class edu.claflin.finder.algo.BronKerbosch

BipartiteCondition - Class in edu.claflin.finder.logic.cond

Represents a bipartite graph as a Condition object.

BipartiteCondition() - Constructor for class edu.claflin.finder.logic.cond.BipartiteCondition

bipartiteDivision(Graph) - Static method in class edu.claflin.finder.logic.BronKerboschBipartiteUtils

Divides the given graph into bipartite sets.

booleanList - Variable in class edu.claflin.finder.algo.ArgumentsBundle

The Mapping of String keywords to Notable Boolean values.

BreadthFirstTraversalSearch - Class in edu.claflin.finder.algo

Processes a Graph searching for subgraphs by performing a breadth first search on each node of the graph.

BreadthFirstTraversalSearch(ArgumentsBundle) - Constructor for class edu.claflin.finder.algo.BreadthFirstTraversalSearch

Public constructor for initializing the BreadthFirstTraversalSearch with default conditions.

bronKerbosch(ArrayList<Graph>, Graph, Graph, Graph, Graph) - Static method in class edu.claflin.finder.algo.BronKerbosch

Recursive helper method to do the above.

BronKerbosch - Class in edu.claflin.finder.algo

Finds Maximum Cliques and Bicliques with Bron Kersboch Algorithm.

BronKerbosch(ArgumentsBundle) - Constructor for class edu.claflin.finder.algo.BronKerbosch

Public constructor for initializing the Bron Kersbboch with default conditions.

bronKerboschBiclique(Graph) - Static method in class edu.claflin.finder.algo.BronKerbosch

Bipartite Bron Kerbosch algorithm that uses the above to find all complete bipartite graphs within a bipartite graph.

BronKerboschBipartiteUtils - Class in edu.claflin.finder.logic

Provides methods to mark graphs as bipartite using the basic Graph, Edge, and Node classes.

BronKerboschBipartiteUtils() - Constructor for class edu.claflin.finder.logic.BronKerboschBipartiteUtils

bronKerboschClique(Graph) - Static method in class edu.claflin.finder.algo.BronKerbosch

Given a graph, finds all complete subgraphs.

buildCommunityGraphs(List<List<Node>>, Graph) - Method in class edu.claflin.finder.algo.clustering.ClusteringAlgorithm

Bundle - Class in edu.claflin.finder.algo

Processes a Graph searching for subgraphs.

Bundle(Algorithm[]) - Constructor for class edu.claflin.finder.algo.Bundle

Constructs the Algorithm object.

bW - Variable in class edu.claflin.finder.log.LogUtil

The BufferedWriter used to log to a file.

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